RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01108 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01108 Molecule name [?]: STRUCTURE OF THE AAGU TETRALOOP Source [?]: RCSB Protein Data Bank Source ID [?]: 2HNS Reference [?]: C.GAUDIN,G.GHAZAL,S.YOSHIZAWA,S.A.ELELA,D.FOURMY. STRUCTURE OF AN AAGU TETRALOOP AND ITS CONTRIBUTION TO SUBSTRATE SELECTION BY YEAST RNASE III.. J.MOL.BIOL. V. 363 322 2006 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 22 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 18

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 9 Average length of a stem [?]: 9 Minimum length of a stem [?]: 9 Maximum estimated free energy [?]: -18.9 Average estimated free energy [?]: -18.9 Minimum estimated free energy [?]: -18.9

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features