RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01064 CRYSTAL STRUCTURE ANALYSIS OF THE AN RNA NONAMER R(GGUGCGC) D(BRC)R(C) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G91 17 PDB_01065 CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGC-(NF2)- AAUUAGCG, WITH AN INCORPORATED 2,4-DIFLUO Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G92 22 PDB_01066 MODIFIED PYRIMIDINES SPECIFICALLY BIND THE PURINE RIBOSWITCH Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G9C 68 PDB_01070 CRYSTAL STRUCTURE OF THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH IN COMPLEX WITH THIAMINE PYROPHOSPHA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GDI 160 PDB_01071 SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA OF BRADYRHIZOBIUM JAPONICUM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GIO 29 PDB_01072 SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA FROM BRADYRHIZOBIUM JANPONICUM HAVING DELE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GIP 28 PDB_01073 STRUCTURE OF THE S-ADENOSYLMETHIONINE RIBOSWITCH MRNA REGULATORY ELEMENT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GIS 94 PDB_01075 LINEAR DIMER OF STEMLOOP SL1 FROM HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GM0 70 PDB_01078 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GPM 64 PDB_01079 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ4 64

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)