RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01078 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01078 Molecule name [?]: CRYSTAL STRUCTURE OF AN RNA RACEMATE Source [?]: RCSB Protein Data Bank Source ID [?]: 2GPM Reference [?]: W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN, L.J.DELUCAS,C.BETZEL,V.A.ERDMANN. THE FIRST CRYSTAL STRUCTURE OF AN RNA RACEMATE.. ACTA CRYSTALLOGR.,SECT.D V. 62 659 2006 ASTM ABCRE6 DK ISSN 0907-4449 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 8 Length [?]: 64 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_01060, PDB_01079, PDB_01080, PDB_01081, PDB_01082 Number of domains [?]: 4 Number of unpaired bases [?]: 12 Number of paired bases [?]: 52

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 26 Maximum length of a stem [?]: 8 Average length of a stem [?]: 6.5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -13.37 Minimum estimated free energy [?]: -16.3

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features