RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01065 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01065 Molecule name [?]: CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGC-(NF2)- AAUUAGCG, WITH AN INCORPORATED 2,4-DIFLUO Source [?]: RCSB Protein Data Bank Source ID [?]: 2G92 Reference [?]: J.XIA,A.NORONHA,I.TOUDJARSKA,F.LI,A.AKINC,R.BRAICH, M.FRANK-KAMENETSKY,K.G.RAJEEV,M.EGLI,M.MANOHARAN. STRUCTURE AND GENE SILENCING ACTIVITY OF SIRNAS WITH A RIBO-DIFLUOROTOLUYL NUCLEOTIDE. ACS CHEM.BIOL. 2006 US ESSN 1554-8937 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.61 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 22 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 20

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 10 Maximum length of a stem [?]: 4 Average length of a stem [?]: 3.33 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -2.9 Average estimated free energy [?]: -4.83 Minimum estimated free energy [?]: -5.8

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features