RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00879 CRYSTAL STRUCTURE OF 7S.S SRP RNA OF M. JANNASCHII SRP RNA M. JANNASCHII RCSB Protein Data Bank 1Z43 101 PDB_00880 CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1Z58 2766 PDB_00901 GLUTAMINYL-TRNA SYNTHETASE COMPLEXED TO GLUTAMINE AND 2'DEOXY A76 GLUTAMINE TRNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1ZJW 74 PDB_00903 IF2, IF1, AND TRNA FITTED TO CRYO-EM DATA OF E. COLI 70S INITIATION COMPLEX tRNA ESCHERICHIA COLI RCSB Protein Data Bank 1ZO1 76 PDB_00904 THE P-SITE AND P/E-SITE TRNA STRUCTURES FITTED TO P/I SITE CODON. tRNA ESCHERICHIA COLI RCSB Protein Data Bank 1ZO3 152 PDB_00917 CRYSTAL STRUCTURE OF THE RNA SUBUNIT OF RIBONUCLEASE P. BACTERIAL A-TYPE. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2A2E 266 PDB_00919 CRYSTAL STRUCTURE OF BACTERIAL RIBONUCLEASE P RNA RNase P RNA Unknown RCSB Protein Data Bank 2A64 298 PDB_00922 STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOS 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 2AAR 2766 PDB_00926 STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRNA(TRP) Other RNA BOS TAURUS RCSB Protein Data Bank 2AKE 72 PDB_00933 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AVY 1530

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)