RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00919 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00919 Molecule name [?]: CRYSTAL STRUCTURE OF BACTERIAL RIBONUCLEASE P RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2A64 Reference [?]: A.V.KAZANTSEV,A.A.KRIVENKO,D.J.HARRINGTON, S.R.HOLBROOK,P.D.ADAMS,N.R.PACE. CRYSTAL STRUCTURE OF A BACTERIAL RIBONUCLEASE P RNA.. PROC.NATL.ACAD.SCI.USA V. 102 13392 2005 ASTM PNASA6 US ISSN 1091-6490 Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.30 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 298 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 92 Number of paired bases [?]: 206

Click on any header below for additional features.

Stem features Number of stems [?]: 18 Number of base pairs in stems [?]: 87 Maximum length of a stem [?]: 11 Average length of a stem [?]: 4.83 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -8.61 Minimum estimated free energy [?]: -20.4

Hairpin loop features Number of hairpin loops [?]: 10 Maximum number of free bases in hairpin loops [?]: 10 Average number of free bases in hairpin loops [?]: 3.9 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 4 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 1.62 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 1.25 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 4 Average internal loop relative asymmetry: 2.25 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 5 Average number of free bases in multi-loops: 1.4 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 5 Average multi-loop absolute asymmetry: 2.61 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 0.57 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 3.33 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 7 Total number of AG non-canonical base pairs: 7

Pseudoknot features Number of pseudoknots [?]: 1 Number of bands: 3 Number of base pairs in bands: 16 Maximum band length: 7 Average band length: 5.33 Minimum band length: 2 Maximum number of bands per pseudoknot: 3 Average number of bands per pseudoknot: 3 Minimum number of bands per pseudoknot: 3 Maximum number of un-bands: 6 Average number of un-bands: 6 Minimum number of un-bands: 6 Maximum number of in-bands: 0 Average number of in-bands: 0 Minimum number of in-bands: 0 Maximum number of unpaired bases: 21 Average number of unpaired bases: 21 Minimum number of unpaired bases: 21 Several ways to remove minimum number of base pairs, per molecule: Yes Minimum number of base pairs to remove, per molecule: 9 Maximum number of base pairs to remove, per pseudoknot: 9 Average number of base pairs to remove, per pseudoknot: 9 Minimum number of base pairs to remove, per pseudoknot: 9 Minimum number of bands to remove, per molecule: 2 Maximum number of bands to remove, per pseudoknot: 2 Average number of bands to remove, per pseudoknot: 2 Minimum number of bands to remove, per pseudoknot: 2