RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00926 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00926 Molecule name [?]: STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRNA(TRP) Source [?]: RCSB Protein Data Bank Source ID [?]: 2AKE Reference [?]: N.SHEN,L.GUO,B.YANG,Y.JIN,J.DING. STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRNA(TRP) REVEALS THE MOLECULAR BASIS OF TRNA RECOGNITION AND SPECIFICITY. NUCLEIC ACIDS RES. V. 34 3246 2006 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BOS TAURUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.10 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 72 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 32 Number of paired bases [?]: 40

Click on any header below for additional features.

Stem features Number of stems [?]: 5 Number of base pairs in stems [?]: 20 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.4 Average estimated free energy [?]: -6.26 Minimum estimated free energy [?]: -9.2

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 5.67 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 7 Average number of free bases in multi-loops: 3 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 7 Average multi-loop absolute asymmetry: 3.67 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 3.5 Average multi-loop relative asymmetry: 0.97 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 1

Pseudoknot features