RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01143 MODEL OF E. COLI SRP BOUND TO 70S RNCS 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2J28 3032 PDB_01144 MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS Other rRNA CANIS FAMILIARIS RCSB Protein Data Bank 2J37 408 PDB_01145 STRUCTURAL BASIS OF RSMA/CSRA RNA RECOGNITION: STRUCTURE OF RSME BOUND TO THE SHINE-DALGARNO SEQUENC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2JPP 40 PDB_01146 MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA Other rRNA STREPTOMYCES AZUREUS RCSB Protein Data Bank 2JQ7 58 PDB_01147 NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH NO MODIFICATIONS tRNA Unknown RCSB Protein Data Bank 2JR4 17 PDB_01148 NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA- VAL3 WITH 2 MODIFICATIONS (CMO5U34 M6A37) tRNA E. COLI RCSB Protein Data Bank 2JRG 17 PDB_01149 NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA- VAL3 WITH 1 MODIFICATION (CMO5U34) tRNA E. COLI RCSB Protein Data Bank 2JRQ 17 PDB_01150 NMR REVEALS ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOO Other rRNA Unknown RCSB Protein Data Bank 2JSE 22 PDB_01151 NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH 1 MODIFICATION (M6A37) tRNA Unknown RCSB Protein Data Bank 2JSG 17 PDB_01152 SOLUTION STRUCTURE OF THE FRAMESHIFT-INDUCING RNA STEM-LOOP IN SIV Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2JTP 34

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)