RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01073 STRUCTURE OF THE S-ADENOSYLMETHIONINE RIBOSWITCH MRNA REGULATORY ELEMENT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GIS 94 PDB_01074 RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2GJW 75 PDB_01075 LINEAR DIMER OF STEMLOOP SL1 FROM HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GM0 70 PDB_01076 STRUCTURE OF SIGNAL RECOGNITION PARTICLE RECEPTOR (SR) IN COMPLEX WITH SIGNAL RECOGNITION PARTICLE ( Other rRNA TRITICUM SP RCSB Protein Data Bank 2GO5 217 PDB_01077 THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME Ham. Ribozyme Unknown RCSB Protein Data Bank 2GOZ 63 PDB_01078 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GPM 64 PDB_01079 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ4 64 PDB_01080 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ5 64 PDB_01081 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ6 64 PDB_01082 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ7 64

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)