RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer Messenger RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00507 Salm.ente._AF389960_1-365 tmRNA Unknown tmRNA Database Salm.ente._AF389960_1-365 365 TMR_00508 Salm.ente._AL627276_1-363 tmRNA Unknown tmRNA Database Salm.ente._AL627276_1-363 363 TMR_00509 Salm.ente._CP000026_1-363 tmRNA Unknown tmRNA Database Salm.ente._CP000026_1-363 363 TMR_00510 Salm.ente._TRW-149539_1-363 tmRNA Unknown tmRNA Database Salm.ente._TRW-149539_1-363 363 TMR_00511 Salm.ente._TRW-295319_1-363 tmRNA Unknown tmRNA Database Salm.ente._TRW-295319_1-363 363 TMR_00512 Salm.ente._TRW-321314_1-363 tmRNA Unknown tmRNA Database Salm.ente._TRW-321314_1-363 363 TMR_00513 Salm.ente._TRW-59204_1-363 tmRNA Unknown tmRNA Database Salm.ente._TRW-59204_1-363 363 TMR_00514 Salm.typh._AY316313_1-363 tmRNA Unknown tmRNA Database Salm.typh._AY316313_1-363 363 TMR_00515 Salm.typh._AY319520_1-363 tmRNA Unknown tmRNA Database Salm.typh._AY319520_1-363 363 TMR_00516 Secu.ecua._TRW-221724_1-1329 tmRNA Unknown tmRNA Database Secu.ecua._TRW-221724_1-1329 1331

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)