RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule TMR_00516 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: TMR_00516 Molecule name [?]: Secu.ecua._TRW-221724_1-1329 Source [?]: tmRNA Database Source ID [?]: Secu.ecua._TRW-221724_1-1329 Reference [?]: Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database) Nucleic Acids Res, 31, 446-447. Type [?]: Transfer Messenger RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 1331 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 1285 Number of paired bases [?]: 46

Click on any header below for additional features.

Stem features Number of stems [?]: 5 Number of base pairs in stems [?]: 23 Maximum length of a stem [?]: 7 Average length of a stem [?]: 4.6 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -1.3 Average estimated free energy [?]: -6.44 Minimum estimated free energy [?]: -13.1

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 1226 Average number of free bases in hairpin loops [?]: 616.5 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 9 Average number of free bases in internal loops: 6.75 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 5 Average internal loop absolute asymmetry: 2.5 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 18 Average number of free bases in multi-loops: 7 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 18 Average multi-loop absolute asymmetry: 12 Minimum multi-loop absolute asymmetry: 3 Maximum multi-loop relative asymmetry: 6 Average multi-loop relative asymmetry: 1.54 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features