RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00964 MS2 (N87AE89K MUTANT)- RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BQ5 36 PDB_00965 MS2 (N87AE89K MUTANT)- VARIANT QBETA RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BS0 21 PDB_00966 MS2 (N87AE89K MUTANT)- QBETA RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BS1 23 PDB_00968 MS2-RNA HAIRPIN (5BRU-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BU1 34 PDB_00970 MS2-RNA HAIRPIN (2ONE-5) COMPLEX VIRUS Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C4Q 34 PDB_00971 MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C4Y 30 PDB_00972 MS2-RNA HAIRPIN (2SU-5-6) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C4Z 30 PDB_00973 MS2-RNA HAIRPIN (A-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C50 27 PDB_00974 MS2-RNA HAIRPIN (G-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C51 28 PDB_00975 REFINEMENT OF P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2CD1 27

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)