RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: 16S Ribosomal RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 723 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00854 CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. 30S SUBUNIT. THE COORDINATES FOR THE 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1YL4 1733 PDB_00933 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AVY 1530 PDB_00935 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AW7 1530 PDB_00946 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBO 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B64 1673 PDB_00952 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBO 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9M 1673 PDB_00954 30S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9O 1673 PDB_01015 A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2E5L 1527 PDB_01039 30S RIBOSOME + DESIGNER ANTIBIOTIC 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2F4V 1511 PDB_01088 STRUCTURE OF THE 30S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MO 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GY9 1716 PDB_01090 STRUCTURE OF THE 30S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC M 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GYB 1716

Analyse the 723 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 723 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 723 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)