RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00339 RNase P RNA, Streptococcus pneumoniae, strain type 4 RNase P RNA Unknown RNase P Database Streptococcus pneumoniae, strain type 4 401 ASE_00340 RNase P RNA, Sporichthya polymorpha, strain IFO 12702 RNase P RNA Unknown RNase P Database Sporichthya polymorpha, strain IFO 12702 304 ASE_00341 RNase P RNA, Schizosaccharomyces pombe RNase P RNA Unknown RNase P Database Schizosaccharomyces pombe 284 ASE_00342 RNase P RNA, Shewanella putrefaciens, strain MR-1 RNase P RNA Unknown RNase P Database Shewanella putrefaciens, strain MR-1 354 ASE_00343 RNase P RNA, Streptococcus pyogenes, strain M1 RNase P RNA Unknown RNase P Database Streptococcus pyogenes, strain M1 409 ASE_00345 RNase P RNA, Sulfolobus shibatae, strain DSM 5389 RNase P RNA Unknown RNase P Database Sulfolobus shibatae, strain DSM 5389 260 ASE_00346 RNase P RNA, Sulfolobus solfataricus, strain P2 RNase P RNA Sulfolobus solfataricus RNase P Database Sulfolobus solfataricus, strain P2 311 ASE_00347 RNase P RNA, Sulfolobus solfataricus, strain P2 RNase P RNA Sulfolobus solfataricus RNase P Database Sulfolobus solfataricus, strain P2 259 ASE_00348 RNase P RNA, Salmonella typhi, strain CT18 RNase P RNA Unknown RNase P Database Salmonella typhi, strain CT18 374 ASE_00349 RNase P RNA, Salmonella typhimurium, strain LT-2 RNase P RNA Unknown RNase P Database Salmonella typhimurium, strain LT-2 375

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)