RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00339 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00339 Molecule name [?]: RNase P RNA, Streptococcus pneumoniae, strain type 4 Source [?]: RNase P Database Source ID [?]: Streptococcus pneumoniae, strain type 4 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 401 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 163 Number of paired bases [?]: 238

Click on any header below for additional features.

Stem features Number of stems [?]: 20 Number of base pairs in stems [?]: 104 Maximum length of a stem [?]: 12 Average length of a stem [?]: 5.2 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.77 Minimum estimated free energy [?]: -17.5

Hairpin loop features Number of hairpin loops [?]: 10 Maximum number of free bases in hairpin loops [?]: 17 Average number of free bases in hairpin loops [?]: 6.9 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.62 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 3 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 6.17 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 1.67 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 5 Average number of free bases in multi-loops: 1.1 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 5 Average multi-loop absolute asymmetry: 2.22 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 0.43 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 3.33 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of UU non-canonical base pairs: 2

Pseudoknot features Number of pseudoknots [?]: 1 Number of bands: 2 Number of base pairs in bands: 15 Maximum band length: 8 Average band length: 7.5 Minimum band length: 7 Maximum number of bands per pseudoknot: 2 Average number of bands per pseudoknot: 2 Minimum number of bands per pseudoknot: 2 Maximum number of un-bands: 6 Average number of un-bands: 6 Minimum number of un-bands: 6 Maximum number of in-bands: 0 Average number of in-bands: 0 Minimum number of in-bands: 0 Maximum number of unpaired bases: 32 Average number of unpaired bases: 32 Minimum number of unpaired bases: 32 Several ways to remove minimum number of base pairs, per molecule: No Minimum number of base pairs to remove, per molecule: 7 Maximum number of base pairs to remove, per pseudoknot: 7 Average number of base pairs to remove, per pseudoknot: 7 Minimum number of base pairs to remove, per pseudoknot: 7 Minimum number of bands to remove, per molecule: 1 Maximum number of bands to remove, per pseudoknot: 1 Average number of bands to remove, per pseudoknot: 1 Minimum number of bands to remove, per pseudoknot: 1