RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00952 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBO 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9M 1673 PDB_00953 50S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF RELEASE FACTOR RF2, TRNAS AND MRNA BOUND TO THE RI 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9N 2937 PDB_00954 30S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9O 1673 PDB_00955 50S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9P 2937 PDB_00988 SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2D19 34 PDB_00990 SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2D1B 78 PDB_00993 STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADI 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 2D3O 2802 PDB_01009 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS A Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU3 71 PDB_01010 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU4 71 PDB_01015 A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2E5L 1527

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)