RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00723 Hammerhead ribozyme (type I), RF00163, Z69690.1/342-390 Ham. Ribozyme Unknown Rfam Database RF00163 Z69690.1/390-342 49 RFA_00724 Hammerhead ribozyme (type I), RF00163, Z69693.1/343-391 Ham. Ribozyme Unknown Rfam Database RF00163 Z69693.1/391-343 49 RFA_00725 Hammerhead ribozyme (type I), RF00163, Z69694.1/342-390 Ham. Ribozyme Unknown Rfam Database RF00163 Z69694.1/390-342 49 RFA_00726 Hammerhead ribozyme (type I), RF00163, Z69697.1/341-389 Ham. Ribozyme Unknown Rfam Database RF00163 Z69697.1/389-341 49 RFA_00727 Hammerhead ribozyme (type I), RF00163, Z69699.1/341-389 Ham. Ribozyme Unknown Rfam Database RF00163 Z69699.1/389-341 49 RFA_00728 Hammerhead ribozyme (type I), RF00163, Z69700.1/341-389 Ham. Ribozyme Unknown Rfam Database RF00163 Z69700.1/389-341 49 RFA_00729 Hammerhead ribozyme (type I), RF00163, Z69701.1/341-389 Ham. Ribozyme Unknown Rfam Database RF00163 Z69701.1/389-341 49 RFA_00804 RNAIII, RF00503, AF230358.1/492-4 RNAIII Staphylococcus aureus Rfam Database RF00503 AF230358.1/4-492 489 RFA_00805 RNAIII, RF00503, AF288215.1/517-1 RNAIII Staphylococcus aureus Rfam Database RF00503 AF288215.1/1-517 517 RFA_00806 RNAIII, RF00503, BX571856.1/2183866-2183350 RNAIII Unknown Rfam Database RF00503 BX571856.1/2183350-2183866 517

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)