RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule RFA_00804 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: RFA_00804 Molecule name [?]: RNAIII, RF00503, AF230358.1/492-4 Source [?]: Rfam Database Source ID [?]: RF00503 AF230358.1/4-492 Reference [?]: Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124. Type [?]: RNAIII [?]     PS figure     PDF figure Figure from original source Organism [?]: Staphylococcus aureus Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 489 Fragments used [?]: N/A Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 207 Number of paired bases [?]: 282

Click on any header below for additional features.

Stem features Number of stems [?]: 23 Number of base pairs in stems [?]: 141 Maximum length of a stem [?]: 11 Average length of a stem [?]: 6.13 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.6 Minimum estimated free energy [?]: -15.9

Hairpin loop features Number of hairpin loops [?]: 13 Maximum number of free bases in hairpin loops [?]: 13 Average number of free bases in hairpin loops [?]: 7.46 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 5 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.6 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 1.5 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 8 Average number of free bases in multi-loops: 3.41 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 6 Average multi-loop absolute asymmetry: 2.61 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 1.08 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 9 Average number of branches in multi-loops: 5.67 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AA non-canonical base pairs: 1

Pseudoknot features