RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00471 Rals.pick._TRW-329_1-358 tmRNA Unknown tmRNA Database Rals.pick._TRW-329_1-358 358 TMR_00472 Rals.sola._AL646052_1-360 tmRNA Unknown tmRNA Database Rals.sola._AL646052_1-360 360 TMR_00473 Rals.sola._AL646061_1-357 tmRNA Unknown tmRNA Database Rals.sola._AL646061_1-357 357 TMR_00474 Recl.amer._TRW-48483-1_1-1294 tmRNA Unknown tmRNA Database Recl.amer._TRW-48483-1_1-1294 1296 TMR_00476 Recl.amer._TRW-48483-3_1-1326 tmRNA Unknown tmRNA Database Recl.amer._TRW-48483-3_1-1326 1328 TMR_00477 Rhiz.legu._AM236080_1-317 tmRNA Unknown tmRNA Database Rhiz.legu._AM236080_1-317 317 TMR_00478 Rhod.balt._BX294141_1-380 tmRNA Unknown tmRNA Database Rhod.balt._BX294141_1-380 380 TMR_00479 Rhod.equi._AY846303_1-369 tmRNA Unknown tmRNA Database Rhod.equi._AY846303_1-369 369 TMR_00480 Rhod.mari._AF550356_1-326 tmRNA Unknown tmRNA Database Rhod.mari._AF550356_1-326 326 TMR_00481 Rhod.mari._TRW-101924_1-326 tmRNA Unknown tmRNA Database Rhod.mari._TRW-101924_1-326 326

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)