RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule TMR_00476 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: TMR_00476 Molecule name [?]: Recl.amer._TRW-48483-3_1-1326 Source [?]: tmRNA Database Source ID [?]: Recl.amer._TRW-48483-3_1-1326 Reference [?]: Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database) Nucleic Acids Res, 31, 446-447. Type [?]: Transfer Messenger RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 1328 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 1286 Number of paired bases [?]: 42

Click on any header below for additional features.

Stem features Number of stems [?]: 5 Number of base pairs in stems [?]: 21 Maximum length of a stem [?]: 7 Average length of a stem [?]: 4.2 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -6.56 Minimum estimated free energy [?]: -12.5

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 1241 Average number of free bases in hairpin loops [?]: 624 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 7 Average number of free bases in internal loops: 4.25 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 5 Average internal loop absolute asymmetry: 2.5 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 14 Average number of free bases in multi-loops: 5.67 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 14 Average multi-loop absolute asymmetry: 9.33 Minimum multi-loop absolute asymmetry: 3 Maximum multi-loop relative asymmetry: 4.67 Average multi-loop relative asymmetry: 1.22 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features