RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00607 Ciliate telomerase RNA, RF00025, U10565.1/50-238 Cili. Telo. RNA Unknown Rfam Database RF00025 U10565.1/238-50 189 RFA_00608 Ciliate telomerase RNA, RF00025, U10566.1/72-260 Cili. Telo. RNA Unknown Rfam Database RF00025 U10566.1/260-72 189 RFA_00609 Ciliate telomerase RNA, RF00025, U10567.1/1-190 Cili. Telo. RNA Unknown Rfam Database RF00025 U10567.1/190-1 190 RFA_00610 Ciliate telomerase RNA, RF00025, U10568.1/27-212 Cili. Telo. RNA Unknown Rfam Database RF00025 U10568.1/212-27 186 RFA_00611 Ciliate telomerase RNA, RF00025, U22349.1/199-360 Cili. Telo. RNA Unknown Rfam Database RF00025 U22349.1/360-199 162 RFA_00612 Ciliate telomerase RNA, RF00025, U22350.1/52-211 Cili. Telo. RNA Unknown Rfam Database RF00025 U22350.1/211-52 160 RFA_00613 Ciliate telomerase RNA, RF00025, U22351.1/80-240 Cili. Telo. RNA Unknown Rfam Database RF00025 U22351.1/240-80 161 RFA_00614 Ciliate telomerase RNA, RF00025, U22353.1/53-206 Cili. Telo. RNA Unknown Rfam Database RF00025 U22353.1/206-53 154 RFA_00615 Ciliate telomerase RNA, RF00025, U22354.1/216-379 Cili. Telo. RNA Unknown Rfam Database RF00025 U22354.1/379-216 164 RFA_00616 Ciliate telomerase RNA, RF00025, U45433.1/242-456 Cili. Telo. RNA Unknown Rfam Database RF00025 U45433.1/456-242 215

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)