RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule RFA_00609 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: RFA_00609 Molecule name [?]: Ciliate telomerase RNA, RF00025, U10567.1/1-190 Source [?]: Rfam Database Source ID [?]: RF00025 U10567.1/190-1 Reference [?]: Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124. Type [?]: Ciliate Telomerase RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 190 Fragments used [?]: N/A Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 116 Number of paired bases [?]: 74

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 37 Maximum length of a stem [?]: 8 Average length of a stem [?]: 4.62 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.7 Average estimated free energy [?]: -8.21 Minimum estimated free energy [?]: -13.9

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 14 Average number of free bases in hairpin loops [?]: 8.33 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 6 Average number of free bases in bulge loops [?]: 1.75 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 11 Average number of free bases in internal loops: 3.75 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 9 Average internal loop absolute asymmetry: 4.5 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 5 Average internal loop relative asymmetry: 3 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 37 Average number of free bases in multi-loops: 15.67 Minimum number of free bases in multi-loop: 3 Maximum multi-loop absolute asymmetry: 34 Average multi-loop absolute asymmetry: 22.67 Minimum multi-loop absolute asymmetry: 4 Maximum multi-loop relative asymmetry: 12.33 Average multi-loop relative asymmetry: 3.44 Minimum multi-loop relative asymmetry: 0.08 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features