RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01122 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2U 1553 PDB_01123 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2V 2958 PDB_01124 GAAA TETRALOOOP RECEPTOR COMPLEX WITH ASSOCIATED COBALT HEXAMMINE. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2I7E 86 PDB_01125 GAAA TETRALOOP RECEPTOR COMPLEX WITH ASSOCIATED MANGANESE IONS. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2I7Z 86 PDB_01130 CRYSTAL STRUCTURE OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH FERRITIN H IRE-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IPY 60 PDB_01139 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J00 1687 PDB_01140 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J01 2891 PDB_01141 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J02 1687 PDB_01142 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J03 2891 PDB_01143 MODEL OF E. COLI SRP BOUND TO 70S RNCS 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2J28 3032

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)