RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01023 GUANINE RIBOSWITCH U22C, A52G MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EEV 68 PDB_01024 GUANINE RIBOSWITCH U47C MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EEW 68 PDB_01027 COMPLEX BETWEEN KANAMYCIN A AND THE 16S-RRNA A SITE. Other RNA Unknown RCSB Protein Data Bank 2ESI 44 PDB_01028 COMPLEX BETWEEN LIVIDOMYCIN A AND THE 16S-RRNA A SITE Other RNA Unknown RCSB Protein Data Bank 2ESJ 42 PDB_01029 COMPLEX BETWEEN GENTAMICIN C1A AND THE 16S-RRNA A-SITE Other RNA Unknown RCSB Protein Data Bank 2ET3 42 PDB_01030 COMPLEX BETWEEN NEOMYCIN B AND THE 16S-RRNA A-SITE Other RNA Unknown RCSB Protein Data Bank 2ET4 42 PDB_01031 COMPLEX BETWEEN RIBOSTAMYCIN AND THE 16S-RRNA A-SITE Other RNA Unknown RCSB Protein Data Bank 2ET5 42 PDB_01032 COMPLEX BETWEEN NEAMINE AND THE 16S-RRNA A-SITE Other RNA Unknown RCSB Protein Data Bank 2ET8 42 PDB_01033 SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA SNORNA 3' HAIRPIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EUY 34 PDB_01036 A-SITE RNA IN COMPLEX WITH NEAMINE Other RNA SYNTHETIC RCSB Protein Data Bank 2F4S 42

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)