RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00528 CRYSTAL STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE INTERACTING WITH THE ESSENTIAL DOMAIN OF ITS M Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1KOG 304 PDB_00534 THE HALOARCULA MARISMORTUI 50S COMPLEXED WITH A PRETRANSLOCATIONAL INTERMEDIATE IN PROTEIN SYNTHESIS 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1KQS 2882 PDB_00542 CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1L9A 126 PDB_00543 CRYSTAL STRUCTURE OF TOBRAMYCIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE Other RNA Unknown RCSB Protein Data Bank 1LC4 42 PDB_00547 CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII SRP RNA METHANOCOCCUS JANNASCHII RCSB Protein Data Bank 1LNG 97 PDB_00554 CO-CRYSTAL STRUCTURE OF AZITHROMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1M1K 2876 PDB_00555 CRYSTAL STRUCTURE OF A HAIRPIN RIBOZYME IN THE CATALYTICALLY-ACTIVE CONFORMATION Hairp. Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1M5K 226 PDB_00557 TRANSITION STATE STABILIZATION BY A CATALYTIC RNA Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1M5O 226 PDB_00558 TRANSITION STATE STABILIZATION BY A CATALYTIC RNA Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1M5P 226 PDB_00559 TRANSITION STATE STABILIZATION BY A CATALYTIC RNA Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1M5V 226

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)