RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00528 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00528 Molecule name [?]: CRYSTAL STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE INTERACTING WITH THE ESSENTIAL DOMAIN OF ITS M Source [?]: RCSB Protein Data Bank Source ID [?]: 1KOG Reference [?]: A.TORRES-LARIOS,A.C.DOCK-BREGEON,P.ROMBY,B.REES, R.SANKARANARAYANAN,J.CAILLET,M.SPRINGER, C.EHRESMANN,B.EHRESMANN,D.MORAS. STRUCTURAL BASIS OF TRANSLATIONAL CONTROL BY ESCHERICHIA COLI THREONYL TRNA SYNTHETASE.. NAT.STRUCT.BIOL. V. 9 343 2002 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 9 Length [?]: 304 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 8 Number of unpaired bases [?]: 98 Number of paired bases [?]: 206

Click on any header below for additional features.

Stem features Number of stems [?]: 16 Number of base pairs in stems [?]: 103 Maximum length of a stem [?]: 7 Average length of a stem [?]: 6.44 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -9.3 Average estimated free energy [?]: -11.94 Minimum estimated free energy [?]: -12.6

Hairpin loop features Number of hairpin loops [?]: 8 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 7 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 8 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 2 Minimum internal loop absolute asymmetry: 2 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 3 Minimum internal loop relative asymmetry: 3

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features