RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01121 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2T 2958 PDB_01122 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2U 1553 PDB_01123 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2V 2958 PDB_01128 SOLUTION STRUCTURE OF THE ROUS SARCOMA VIRUS NUCLEOCAPSID PROTEIN:UPSI RNA PACKAGING SIGNAL COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IHX 75 PDB_01133 SOLUTION STRUCTURE OF THE APICAL STEM-LOOP OF THE HUMAN HEPATITIS B VIRUS ENCAPSIDATION SIGNAL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IXY 27 PDB_01135 MS2-RNA HAIRPIN (C-7) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZ8 29 PDB_01136 MS2-RNA HAIRPIN (4ONE-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZ9 30 PDB_01137 MS2-RNA HAIRPIN (C-10) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZM 26 PDB_01138 MS2-RNA HAIRPIN (G-10) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZN 26 PDB_01139 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J00 1687

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)