RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01038 ASITE RNA + DESIGNER ANTIBIOTIC Other RNA SYNTHETIC RCSB Protein Data Bank 2F4U 42 PDB_01039 30S RIBOSOME + DESIGNER ANTIBIOTIC 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2F4V 1511 PDB_01052 CRYSTAL STRUCTURE OF A MINIMAL, ALL RNA HAIRPIN RIBOZYME WITH MODIFICATIONS (G8DAP, U39C) AT PH 8.6 Hairp. Ribozyme Unknown RCSB Protein Data Bank 2FGP 61 PDB_01065 CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGC-(NF2)- AAUUAGCG, WITH AN INCORPORATED 2,4-DIFLUO Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G92 22 PDB_01070 CRYSTAL STRUCTURE OF THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH IN COMPLEX WITH THIAMINE PYROPHOSPHA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GDI 160 PDB_01071 SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA OF BRADYRHIZOBIUM JAPONICUM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GIO 29 PDB_01074 RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2GJW 75 PDB_01075 LINEAR DIMER OF STEMLOOP SL1 FROM HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GM0 70 PDB_01076 STRUCTURE OF SIGNAL RECOGNITION PARTICLE RECEPTOR (SR) IN COMPLEX WITH SIGNAL RECOGNITION PARTICLE ( Other rRNA TRITICUM SP RCSB Protein Data Bank 2GO5 217 PDB_01077 THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME Ham. Ribozyme Unknown RCSB Protein Data Bank 2GOZ 63

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)