RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00978 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA, C70U MUTANT COBALT Other RNA Unknown RCSB Protein Data Bank 2CD6 27 PDB_00979 STRUCTURE OF THE ARABIDOPSIS THALIANA THIAMINE PYROPHOSPHATE RIBOSWITCH WITH ITS REGULATORY LIGAND Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2CKY 154 PDB_00986 SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV- 1 DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2D17 30 PDB_00987 SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2D18 34 PDB_00989 SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2D1A 78 PDB_00991 CRYSTAL STRUCTURE OF A MINIMAL, NATIVE (U39) ALL-RNA HAIRPIN RIBOZYME Hairp. Ribozyme Unknown RCSB Protein Data Bank 2D2K 61 PDB_00992 CRYSTAL STRUCTURE OF A MINIMAL, ALL-RNA HAIRPIN RIBOZYME WITH A PROPYL LINKER (C3) AT POSITION U39 Hairp. Ribozyme Unknown RCSB Protein Data Bank 2D2L 60 PDB_00993 STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADI 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 2D3O 2802 PDB_01015 A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2E5L 1527 PDB_01032 COMPLEX BETWEEN NEAMINE AND THE 16S-RRNA A-SITE Other RNA Unknown RCSB Protein Data Bank 2ET8 42

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)