RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00864 LOCALIZATION AND DYNAMIC BEHAVIOR OF RIBOSOMAL PROTEIN L30E Other rRNA ORYZA SATIVA RCSB Protein Data Bank 1YSH 162 PDB_00876 SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING ELEMENT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z2J 45 PDB_00878 THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF HUMAN TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z31 32 PDB_00880 CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1Z58 2766 PDB_00885 STRUCTURE OF THE RNA SIGNAL ESSENTIAL FOR TRANSLATIONAL FRAMESHIFTING IN HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZC5 41 PDB_00887 MS2 COAT PROTEIN/RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDH 26 PDB_00888 RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDI 29 PDB_00890 STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDK 38 PDB_00893 THE CRYSTAL STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTANT G8I AT THE CLEAVAGE SITE Other Ribozyme Unknown RCSB Protein Data Bank 1ZFT 61 PDB_00894 THE STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTATION G8A AT THE CLEAVAGE SITE Hairp. Ribozyme Unknown RCSB Protein Data Bank 1ZFV 61

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)