RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00820 SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM OLIGORIBONUCLEOTIDE, U69C/C70U MUTATION RNase P RNA Unknown RCSB Protein Data Bank 1XSH 27 PDB_00821 SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM, U69A MUTATION, COMPLEXED WITH COBALT (III) HEXAMMI RNase P RNA Unknown RCSB Protein Data Bank 1XST 27 PDB_00822 SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM, U69C/C70U MUTATION, COMPLEXED WITH COBALT (III) HE RNase P RNA Unknown RCSB Protein Data Bank 1XSU 27 PDB_00833 RRF DOMAIN I IN COMPLEX WITH THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1Y69 2884 PDB_00834 HIV-1 DIS(MAL) DUPLEX BA-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y6S 46 PDB_00835 HIV-1 DIS(MAL) DUPLEX CO HEXAMINE-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y6T 46 PDB_00836 HIV-1 DIS(MAL) DUPLEX PT-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y73 46 PDB_00837 HIV-1 DIS(MAL) DUPLEX MN-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y90 46 PDB_00838 HIV-1 DIS(MAL) DUPLEX PB-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y95 46 PDB_00839 HIV-1 SUBTYPE A DIS RNA DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y99 46

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)