RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00820 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00820 Molecule name [?]: SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM OLIGORIBONUCLEOTIDE, U69C/C70U MUTATION Source [?]: RCSB Protein Data Bank Source ID [?]: 1XSH Reference [?]: M.SCHMITZ. CHANGE OF RNASE P RNA FUNCTION BY SINGLE BASE MUTATION CORRELATES WITH PERTURBATION OF METAL ION BINDING IN P4 AS DETERMINED BY NMR SPECTROSCOPY. NUCLEIC ACIDS RES. V. 32 6358 2004 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 27 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00822 Number of domains [?]: 1 Number of unpaired bases [?]: 5 Number of paired bases [?]: 22

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 11 Maximum length of a stem [?]: 6 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -8.8 Average estimated free energy [?]: -10.6 Minimum estimated free energy [?]: -12.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features