RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule TMR_00468 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: TMR_00468 Molecule name [?]: Pyla.litt._AF169625_1-398 Source [?]: tmRNA Database Source ID [?]: Pyla.litt._AF169625_1-398 Reference [?]: Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database) Nucleic Acids Res, 31, 446-447. Type [?]: Transfer Messenger RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 398 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 356 Number of paired bases [?]: 42

Click on any header below for additional features.

Stem features Number of stems [?]: 7 Number of base pairs in stems [?]: 21 Maximum length of a stem [?]: 8 Average length of a stem [?]: 3 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -1.56 Minimum estimated free energy [?]: -6.9

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 8 Minimum number of free bases in hairpin loop [?]: 8

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 265 Average number of free bases in bulge loops [?]: 132.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 5 Maximum number of free bases in internal loops: 8 Average number of free bases in internal loops: 3.1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 0.6 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 1.2 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features