RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SPR_00362 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SPR_00362 Molecule name [?]: Sprinzl tRNA RR4640 Source [?]: Sprinzl tRNA Database Source ID [?]: RR4640 Reference [?]: M. Sprinzl and K.S. Vassilenko, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Research, 2005, Vol. 33, D139-D140. Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 54 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: SPR_00397 Number of domains [?]: 1 Number of unpaired bases [?]: 28 Number of paired bases [?]: 26

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 13 Maximum length of a stem [?]: 7 Average length of a stem [?]: 6.5 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -5.4 Average estimated free energy [?]: -7.1 Minimum estimated free energy [?]: -8.8

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 9.5 Minimum number of free bases in internal loop: 7 Maximum internal loop absolute asymmetry: 5 Average internal loop absolute asymmetry: 5 Minimum internal loop absolute asymmetry: 5 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features