RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SPR_00078 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SPR_00078 Molecule name [?]: Sprinzl tRNA RF4640 Source [?]: Sprinzl tRNA Database Source ID [?]: RF4640 Reference [?]: M. Sprinzl and K.S. Vassilenko, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Research, 2005, Vol. 33, D139-D140. Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 62 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 32 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 5 Average length of a stem [?]: 3.75 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -4.33 Minimum estimated free energy [?]: -8.8

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 5.67 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 2.75 Minimum number of free bases in multi-loop: 1 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 1.83 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 4 Average multi-loop relative asymmetry: 1.5 Minimum multi-loop relative asymmetry: 0.25 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features