RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01341 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01341 Molecule name [?]: HIGH RESOLUTION NMR STRUCTURE OF THE STEREOREGULAR (ALL-RP)- PHOSPHOROTHIOATE-DNA/RNA HYBRID D (G*PS Source [?]: RCSB Protein Data Bank Source ID [?]: 8PSH Reference [?]: M.BACHELIN,G.HESSLER,G.KURZ,J.G.HACIA,P.B.DERVAN, H.KESSLER. STRUCTURE OF A STEREOREGULAR PHOSPHOROTHIOATE DNA/RNA DUPLEX. NAT.STRUCT.BIOL. V. 5 271 1998 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 16 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -17.9 Average estimated free energy [?]: -17.9 Minimum estimated free energy [?]: -17.9

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features