RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01340 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01340 Molecule name [?]: MS2 PROTEIN CAPSID/RNA COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 7MSF Reference [?]: S.ROWSELL,N.J.STONEHOUSE,M.A.CONVERY,C.J.ADAMS, A.D.ELLINGTON,I.HIRAO,D.S.PEABODY,P.G.STOCKLEY, S.E.PHILLIPS. CRYSTAL STRUCTURES OF A SERIES OF RNA APTAMERS COMPLEXED TO THE SAME PROTEIN TARGET.. NAT.STRUCT.BIOL. V. 5 970 1998 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 25 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 9 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -8.65 Minimum estimated free energy [?]: -10.6

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features