RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01274 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01274 Molecule name [?]: LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A TRNA(LEU) TRANSCRIPT WITH 5-FLUORO Source [?]: RCSB Protein Data Bank Source ID [?]: 2V0G Reference [?]: F.ROCK,W.MAO,A.YAREMCHUK,M.TUKALO,T.CREPIN,H.ZHOU, Y.ZHANG,V.HERNANDEZ,T.AKAMA,S.BAKER,J.PLATTNER, L.SHAPIRO,S.A.MARTINIS,S.J.BENKOVIC,S.CUSACK, M.R.K.ALLEY. AN ANTIFUNGAL AGENT INHIBITS AN AMINOACYL-TRNA SYNTHETASE BY TRAPPING TRNA IN THE EDITING SITE.. SCIENCE V. 316 1759 2007 ASTM SCIEAS US ISSN 0036-8075 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: THERMUS THERMOPHILUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 152 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 62 Number of paired bases [?]: 90

Click on any header below for additional features.

Stem features Number of stems [?]: 11 Number of base pairs in stems [?]: 45 Maximum length of a stem [?]: 7 Average length of a stem [?]: 4.09 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -8.19 Minimum estimated free energy [?]: -19

Hairpin loop features Number of hairpin loops [?]: 8 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 5.12 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 2 Average number of free bases in multi-loops: 0.8 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 2 Average multi-loop absolute asymmetry: 1.2 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1 Average multi-loop relative asymmetry: 0.25 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 5 Minimum number of branches in multi-loops: 5

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AA non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1 Total number of GG non-canonical base pairs: 1

Pseudoknot features