RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01249 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01249 Molecule name [?]: PP7 COAT PROTEIN DIMER IN COMPLEX WITH RNA HAIRPIN Source [?]: RCSB Protein Data Bank Source ID [?]: 2QUX Reference [?]: J.A.CHAO,Y.PATSKOVSKY,S.C.ALMO,R.H.SINGER. STRUCTURAL BASIS FOR THE COEVOLUTION OF A VIRAL RNA-PROTEIN COMPLEX.. NAT.STRUCT.MOL.BIOL. V. 15 103 2008 US ISSN 1545-9993 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.44 ANGSTROMS; ran through RNAview Number of molecules [?]: 6 Length [?]: 150 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 6 Number of unpaired bases [?]: 42 Number of paired bases [?]: 108

Click on any header below for additional features.

Stem features Number of stems [?]: 12 Number of base pairs in stems [?]: 54 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -5.4 Average estimated free energy [?]: -8.2 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 6

Bulge loop features Number of bulge loops [?]: 6 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features