RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01205 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01205 Molecule name [?]: STRUCTURE OF THE MRNA BINDING FRAGMENT OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA. Source [?]: RCSB Protein Data Bank Source ID [?]: 2PLY Reference [?]: N.SOLER,D.FOURMY,S.YOSHIZAWA. STRUCTURAL INSIGHT INTO A MOLECULAR SWITCH IN TANDEM WINGED-HELIX MOTIFS FROM ELONGATION FACTOR SELB.. J.MOL.BIOL. V. 370 728 2007 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 46 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_01270 Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 36

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 18 Maximum length of a stem [?]: 9 Average length of a stem [?]: 9 Minimum length of a stem [?]: 9 Maximum estimated free energy [?]: -21 Average estimated free energy [?]: -21 Minimum estimated free energy [?]: -21

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features