RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01199 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01199 Molecule name [?]: STRUCTURE OF A HUMAN PRP31-15.5K-U4 SNRNA COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 2OZB Reference [?]: S.LIU,P.LI,O.DYBKOV,S.NOTTROTT,K.HARTMUTH, R.LUEHRMANN,T.CARLOMAGNO,M.C.WAHL. STRUCTURE-SENSITIVE BINDING OF HUMAN PRP31 TO A COMPOSITE RNA-PROTEIN PLATFORM IN U4 SNRNP. TO BE PUBLISHED Type [?]: Small nuclear RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 66 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 18 Number of paired bases [?]: 48

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 24 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -3.3 Average estimated free energy [?]: -6.13 Minimum estimated free energy [?]: -8.4

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 3 Average number of free bases in bulge loops [?]: 1 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AG non-canonical base pairs: 4

Pseudoknot features