RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01167 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01167 Molecule name [?]: SOLUTION STRUCTURE OF U2 SNRNA STEM I FROM HUMAN, CONTAINING MODIFIED NUCLEOTIDES Source [?]: RCSB Protein Data Bank Source ID [?]: 2O32 Reference [?]: D.G.SASHITAL,V.VENDITTI,C.G.ANGERS,G.CORNILESCU, S.E.BUTCHER. STRUCTURE AND THERMODYNAMICS OF A CONSERVED U2 SNRNA DOMAIN FROM YEAST AND HUMAN.. RNA V. 13 328 2007 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Small nuclear RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HUMAN Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 20 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -13.3 Average estimated free energy [?]: -13.3 Minimum estimated free energy [?]: -13.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AC non-canonical base pairs: 1

Pseudoknot features