RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01164
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01164
Molecule name [?]:	CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.5-ANGSTROM RESOLUTIO
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2NUF
Reference [?]:	J.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI. A STEPWISE MODEL FOR DOUBLE-STRANDED RNA PROCESSING BY RIBONUCLEASE III.. MOL.MICROBIOL. V. 67 143 2007 ASTM MOMIEE UK ISSN 0950-382X
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	AQUIFEX AEOLICUS
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	56
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	4
Number of paired bases [?]:	52

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	26
Maximum length of a stem [?]:	14
Average length of a stem [?]:	13
Minimum length of a stem [?]:	12
Maximum estimated free energy [?]:	-18.9
Average estimated free energy [?]:	-21.8
Minimum estimated free energy [?]:	-24.7

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AG non-canonical base pairs:	2

Pseudoknot features