RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01163
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01163
Molecule name [?]:	CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.9-ANGSTROM RESOLUTIO
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2NUE
Reference [?]:	J.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI. A STEPWISE MODEL FOR DOUBLE-STRANDED RNA PROCESSING BY RIBONUCLEASE III.. MOL.MICROBIOL. V. 67 143 2007 ASTM MOMIEE UK ISSN 0950-382X
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	AQUIFEX AEOLICUS
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview
Number of molecules [?]:	1
Length [?]:	46
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	44

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	22
Maximum length of a stem [?]:	22
Average length of a stem [?]:	22
Minimum length of a stem [?]:	22
Maximum estimated free energy [?]:	-44.4
Average estimated free energy [?]:	-44.4
Minimum estimated free energy [?]:	-44.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features