RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00929
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00929
Molecule name [?]:	CRYSTAL STRUCTURE OF AN RNA DUPLEX R(GGCGBRUGCGCU)2 WITH TERMINAL AND INTERNAL TANDEM G-U BASE PAIRS
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2AO5
Reference [?]:	R.UTSUNOMIYA,K.SUTO,D.BALASUNDARESAN,A.FUKAMIZU, P.K.KUMAR,H.MIZUNO. STRUCTURE OF AN RNA DUPLEX R(GGCGBRUGCGCU)2 WITH TERMINAL AND INTERNAL TANDEM G.U BASE PAIRS.. ACTA CRYSTALLOGR.,SECT.D V. 62 331 2006 ASTM ABCRE6 DK ISSN 0907-4449
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.10 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	40
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	0
Number of paired bases [?]:	40

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	20
Maximum length of a stem [?]:	10
Average length of a stem [?]:	10
Minimum length of a stem [?]:	10
Maximum estimated free energy [?]:	-20.5
Average estimated free energy [?]:	-20.5
Minimum estimated free energy [?]:	-20.5

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features