RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00928 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00928 Molecule name [?]: CRYSTAL STRUCTURE (II) OF NOVA-1 KH1/KH2 DOMAIN TANDEM WITH 25NT RNA HAIRPIN Source [?]: RCSB Protein Data Bank Source ID [?]: 2ANR Reference [?]: L.MALININA,M.TEPLOVA,K.MUSUNURU,A.TEPLOV, J.C.DARNELL,S.K.BURLEY,R.B.DARNELL,D.J.PATEL. STRUCTURAL INSIGHTS INTO RNA RECOGNITION VERSUS DIMERIZATION BY KH DOMAINS OF THE NEURONAL SPLICING FACTOR NOVA-1. TO BE PUBLISHED Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.94 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 25 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 9 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -10.3 Average estimated free energy [?]: -10.3 Minimum estimated free energy [?]: -10.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 9 Minimum number of free bases in hairpin loop [?]: 9

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 2

Pseudoknot features