RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00875 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00875 Molecule name [?]: CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING A SITE SPECIFIC 2'-AMINE SUBSTITUTION AT A C-G WATSON- Source [?]: RCSB Protein Data Bank Source ID [?]: 1YZD Reference [?]: C.M.GHERGHE,J.M.KRAHN,K.M.WEEKS. CRYSTAL STRUCTURES, REACTIVITY AND INFERRED ACYLATION TRANSITION STATES FOR 2'-AMINE SUBSTITUTED RNA.. J.AM.CHEM.SOC. V. 127 13622 2005 ASTM JACSAT US ISSN 0002-7863 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.35 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 48 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 16 Number of paired bases [?]: 32

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 16 Maximum length of a stem [?]: 16 Average length of a stem [?]: 16 Minimum length of a stem [?]: 16 Maximum estimated free energy [?]: -31.7 Average estimated free energy [?]: -31.7 Minimum estimated free energy [?]: -31.7

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features