RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00824 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00824 Molecule name [?]: THE SOLUTION STRUCTURE OF 2',5'-LINKED 3'-O-(2- METHOXYETHYL)-RNA HAIRPIN Source [?]: RCSB Protein Data Bank Source ID [?]: 1XV6 Reference [?]: M.PLEVNIK,Z.GDANIEC,J.PLAVEC. SOLUTION STRUCTURE OF A MODIFIED 2',5'-LINKED RNA HAIRPIN INVOLVED IN AN EQUILIBRIUM WITH DUPLEX. NUCLEIC ACIDS RES. V. 33 1749 2005 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 12 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 8

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 4 Maximum length of a stem [?]: 4 Average length of a stem [?]: 4 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -8.2 Average estimated free energy [?]: -8.2 Minimum estimated free energy [?]: -8.2

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features