RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00767 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00767 Molecule name [?]: CRYSTAL STRUCTURE OF TRNA NUCLEOTIDYLTRANSFERASE COMPLEXED WITH A PRIMER TRNA AND AN INCOMING ATP AN Source [?]: RCSB Protein Data Bank Source ID [?]: 1VFG Reference [?]: K.TOMITA,S.FUKAI,R.ISHITANI,T.UEDA,N.TAKEUCHI, D.G.VASSYLYEV,O.NUREKI. STRUCTURAL BASIS FOR TEMPLATE-INDEPENDENT RNA POLYMERIZATION.. NATURE V. 430 700 2004 ASTM NATUAS UK ISSN 0028-0836 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: AQUIFEX AEOLICUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 67 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 27 Number of paired bases [?]: 40

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 20 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -5.8 Average estimated free energy [?]: -11.65 Minimum estimated free energy [?]: -17.5

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 9 Minimum number of free bases in hairpin loop [?]: 9

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features