RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00742 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00742 Molecule name [?]: CRYSTAL STRUCTURE OF CYSTEINYL-TRNA SYNTHETASE BINARY COMPLEX WITH TRNACYS Source [?]: RCSB Protein Data Bank Source ID [?]: 1U0B Reference [?]: S.HAUENSTEIN,C.M.ZHANG,Y.M.HOU,J.J.PERONA. SHAPE-SELECTIVE RNA RECOGNITION BY CYSTEINYL-TRNA SYNTHETASE. NAT.STRUCT.MOL.BIOL. V. 11 1134 2004 US ISSN 1545-9993 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 74 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 32 Number of paired bases [?]: 42

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 21 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.25 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.3 Average estimated free energy [?]: -11.13 Minimum estimated free energy [?]: -17.1

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 7 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.75 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.17 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 4 Average multi-loop relative asymmetry: 1.03 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features